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1

Prospects for systems biology and modeling of the gut microbiome

Fredrik H. Karlsson, Intawat Nookaew, Dina Petranovic, Jens Nielsen

Journal:

Trends in Biotechnology

Year:

2011

Language:

english

File:

PDF, 837 KB

english, 2011

2

Prospects of yeast systems biology for human health: integrating lipid, protein and energy metabolism

Dina Petranovic, Keith Tyo, Goutham N. Vemuri, Jens Nielsen

Journal:

FEMS Yeast Research

Year:

2010

Language:

english

File:

PDF, 651 KB

english, 2010

3

Yeast cell aging and death

Petranovic, Dina, Ganley, Austen

Journal:

FEMS Yeast Research

Year:

2014

Language:

english

File:

PDF, 32 KB

english, 2014

4

Microfluidic screening and whole-genome sequencing identifies mutations associated with improved protein secretion by yeast

Huang, Mingtao, Bai, Yunpeng, Sjostrom, Staffan L., Hallström, Björn M., Liu, Zihe, Petranovic, Dina, Uhlén, Mathias, Joensson, Haakan N., Andersson-Svahn, Helene, Nielsen, Jens

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.01 MB

english, 2015

5

Engineering the oxygen sensing regulation results in an enhanced recombinant human hemoglobin production by Saccharomyces cerevisiae

Martínez, José L., Liu, Lifang, Petranovic, Dina, Nielsen, Jens

Journal:

Biotechnology and Bioengineering

Year:

2015

Language:

english

File:

PDF, 306 KB

english, 2015

6

RNAi expression tuning, microfluidic screening, and genome recombineering for improved protein production in Saccharomyces cerevisiae

Wang, Guokun, Björk, Sara M., Huang, Mingtao, Liu, Quanli, Campbell, Kate, Nielsen, Jens, Joensson, Haakan N., Petranovic, Dina

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 1.68 MB

english, 2019

7

Insights from site-specific phosphoproteomics in bacteria

Boumediene Soufi, Carsten Jers, Mette Erichsen Hansen, Dina Petranovic, Ivan Mijakovic

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2008

Language:

english

File:

PDF, 361 KB

english, 2008

8

Tunable promoters in systems biology

Ivan Mijakovic, Dina Petranovic, Peter Ruhdal Jensen

Journal:

Current Opinion in Biotechnology

Year:

2005

Language:

english

File:

PDF, 134 KB

english, 2005

9

Impact of yeast systems biology on industrial biotechnology

Dina Petranovic, Goutham N. Vemuri

Journal:

Journal of Biotechnology

Year:

2009

Language:

english

File:

PDF, 577 KB

english, 2009

10

The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins

Boumediene Soufi, Florian Gnad, Peter Ruhdal Jensen, Dina Petranovic, Matthias Mann, Ivan Mijakovic, Boris Macek

Journal:

Year:

2008

Language:

english

File:

PDF, 263 KB

english, 2008

11

Intracellular effectors regulating the activity of the Lactococcus lactis CodY pleiotropic transcription regulator

Dina Petranovic, Eric Guédon, Brice Sperandio, Christine Delorme, Dusko Ehrlich, Pierre Renault

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 107 KB

english, 2004

12

Bacillus subtilis strain deficient for the protein-tyrosine kinase PtkA exhibits impaired DNA replication

Dina Petranovic, Ole Michelsen, Ksenija Zahradka, Catarina Silva, Mirjana Petranovic, Peter Ruhdal Jensen, Ivan Mijakovic

Journal:

Molecular Microbiology

Year:

2007

Language:

english

File:

PDF, 300 KB

english, 2007

13

Systems biology of yeast cell death

Ana Joyce Munoz, Kwanjeera Wanichthanarak, Eugenio Meza, Dina Petranovic

Journal:

FEMS Yeast Research

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

14

Increased biomass yield of Lactococcus lactis during energetically limited growth and respiratory conditions

Brian Koebmann, Lars Mathias Blank, Christian Solem, Dina Petranovic, Lars K. Nielsen, Peter Ruhdal Jensen

Journal:

Biotechnology and Applied Biochemistry

Year:

2008

Language:

english

File:

PDF, 142 KB

english, 2008

15

Heterologous production of polyunsaturated fatty acids in Saccharomyces cerevisiae causes a global transcriptional response resulting in reduced proteasomal activity and increased oxidative stress

Rawisara Ruenwai, Andrea Neiss, Kobkul Laoteng, Wanwipa Vongsangnak, Arastoo Badoei Dalfard, Supapon Cheevadhanarak, Dina Petranovic, Professor Jens Nielsen

Journal:

Biotechnology Journal

Year:

2011

Language:

english

File:

PDF, 664 KB

english, 2011

16

Different expression systems for production of recombinant proteins in Saccharomyces cerevisiae

Zihe Liu, Keith E.J. Tyo, José L. Martínez, Dina Petranovic, Jens Nielsen

Journal:

Biotechnology and Bioengineering

Year:

2012

Language:

english

File:

PDF, 848 KB

english, 2012

17

Can yeast systems biology contribute to the understanding of human disease?

Dina Petranovic, Jens Nielsen

Journal:

Trends in Biotechnology

Year:

2008

Language:

english

File:

PDF, 556 KB

english, 2008

18

Engineering of vesicle trafficking improves heterologous protein secretion in Saccharomyces cerevisiae

Jin Hou, Keith Tyo, Zihe Liu, Dina Petranovic, Jens Nielsen

Journal:

Metabolic Engineering

Year:

2012

Language:

english

File:

PDF, 586 KB

english, 2012

19

Metabolic engineering of recombinant protein secretion by Saccharomyces cerevisiae

Jin Hou, Keith E.J. Tyo, Zihe Liu, Dina Petranovic, Jens Nielsen

Journal:

FEMS Yeast Research

Year:

2012

Language:

english

File:

PDF, 419 KB

english, 2012

20

Imbalance of heterologous protein folding and disulfide bond formation rates yields runaway oxidative stress

Keith EJ Tyo, Zihe Liu, Dina Petranovic, Jens Nielsen

Journal:

Year:

2012

Language:

english

File:

PDF, 658 KB

english, 2012

21

Photometric assay for measuring the intracellular concentration of branched-chain amino acids in bacteria

Dina Petranovic, Ivan Mijakovic

Journal:

Journal of Microbiological Methods

Year:

2004

Language:

english

File:

PDF, 153 KB

english, 2004

22

Genetic evidence that the elevated levels of Escherichia coli helicase II antagonize recombinational DNA repair

Mirjana Petranović, Ksenija Zahradka, Davor Zahradka, Dina Petranović, Biserka Nagy, Erika Salaj-Šmic, Dragutin Petranović

Journal:

Year:

2001

Language:

english

File:

PDF, 131 KB

english, 2001

23

Pharmaceutical protein production by yeast: towards production of human blood proteins by microbial fermentation

José L Martínez, Lifang Liu, Dina Petranovic, Jens Nielsen

Journal:

Current Opinion in Biotechnology

Year:

2012

Language:

english

File:

PDF, 735 KB

english, 2012

24

Symptomatic atherosclerosis is associated with an altered gut metagenome

Karlsson, Fredrik H., Fåk, Frida, Nookaew, Intawat, Tremaroli, Valentina, Fagerberg, Björn, Petranovic, Dina, Bäckhed, Fredrik, Nielsen, Jens

Journal:

Nature Communications

Year:

2012

Language:

english

File:

PDF, 457 KB

english, 2012

25

Correlation of cell growth and heterologous protein production bySaccharomyces cerevisiae

Liu, Zihe, Hou, Jin, MartÃnez, JosÃ© L., Petranovic, Dina, Nielsen, Jens

Journal:

Applied Microbiology and Biotechnology

Year:

2013

Language:

english

File:

PDF, 378 KB

english, 2013

26

Heat shock response improves heterologous protein secretion inSaccharomyces cerevisiae

Hou, Jin, Ãsterlund, Tobias, Liu, Zihe, Petranovic, Dina, Nielsen, Jens

Journal:

Applied Microbiology and Biotechnology

Year:

2013

Language:

english

File:

PDF, 384 KB

english, 2013

27

How Tyrosine Phosphorylation Affects the UDP-Glucose Dehydrogenase Activity of Bacillus subtilis YwqF

Mijakovic, Ivan, Petranovic, Dina, Deutscher, Josef

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2004

Language:

english

File:

PDF, 284 KB

english, 2004

28

Phosphoglycerate Mutase Is a Highly Efficient Enzyme without Flux Control in Lactococcus lactis

Solem, Christian, Petranovic, Dina, Koebmann, Brian, Mijakovic, Ivan, Jensen, Peter Ruhdal

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 481 KB

english, 2010

29

Balanced globin protein expression and heme biosynthesis improve production of human hemoglobin in Saccharomyces cerevisiae

Liu, Lifang, Martínez, José L., Liu, Zihe, Petranovic, Dina, Nielsen, Jens

Journal:

Metabolic Engineering

Year:

2014

Language:

english

File:

PDF, 379 KB

english, 2014

30

Management of the endoplasmic reticulum stress by activation of the heat shock response in yeast

Hou, Jin, Tang, Hongting, Liu, Zihe, Österlund, Tobias, Nielsen, Jens, Petranovic, Dina

Journal:

FEMS Yeast Research

Year:

2014

Language:

english

File:

PDF, 1.33 MB

english, 2014

31

Impact of protein uptake and degradation on recombinant protein secretion in yeast

Tyo, Keith E. J., Liu, Zihe, Magnusson, Ylva, Petranovic, Dina, Nielsen, Jens

Journal:

Applied Microbiology and Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

32

Approaches to study yeast cell aging and death

Mirisola, Mario G., Braun, Ralf J., Petranovic, Dina

Journal:

FEMS Yeast Research

Year:

2014

Language:

english

File:

PDF, 223 KB

english, 2014

33

Protein-Tyrosine Phosphorylation in Bacillus subtilis

Mijakovic, Ivan, Petranovic, Dina, Bottini, Nunzio, Deutscher, Josef, Ruhdal Jensen, Peter

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2005

Language:

english

File:

PDF, 285 KB

english, 2005

34

Activation of Bacillus subtilis Ugd by the BY-Kinase PtkA Proceeds via Phosphorylation of Its Residue Tyrosine 70

Petranovic, Dina, Grangeasse, Christophe, Macek, Boris, Abdillatef, Mohammad, Gueguen-Chaignon, Virginie, Nessler, Sylvie, Deutscher, Josef, Mijakovic, Ivan

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2009

Language:

english

File:

PDF, 454 KB

english, 2009

35

Boolean Model of Yeast Apoptosis as a Tool to Study Yeast and Human Apoptotic Regulations

Kazemzadeh, Laleh, Cvijovic, Marija, Petranovic, Dina

Journal:

Frontiers in Physiology

Year:

2012

Language:

english

File:

PDF, 3.57 MB

english, 2012

36

Genome-wide expression analyses of the stationary phase model of ageing in yeast

Wanichthanarak, Kwanjeera, Wongtosrad, Nutvadee, Petranovic, Dina

Journal:

Mechanisms of Ageing and Development

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

37

Amyloid-β peptide-induced cytotoxicity and mitochondrial dysfunction in yeast

Chen, Xin, Petranovic, Dina, Mazzoni, Cristina

Journal:

FEMS Yeast Research

Year:

2015

Language:

english

File:

PDF, 705 KB

english, 2015

38

Improving heterologous protein secretion at aerobic conditions by activating hypoxia-induced genes in Saccharomyces cerevisiae

Liu, Lifang, Zhang, Yiming, Liu, Zihe, Petranovic, Dina, Nielsen, Jens, Ah Kang, Hyun

Journal:

FEMS Yeast Research

Year:

2015

Language:

english

File:

PDF, 1.70 MB

english, 2015

39

Non-Linear Microscopy of Mitochondrial Damage and Abnormal Lipid Metabolism in Beta-Amyloid Expressing Yeast

Agarwal, Nisha Rani, Chen, Xin, Shunmugavel, Kumaravel Ponnandai, Petranovic, Dina, Enejder, Annika

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

40

Interview with Professor Thomas Nyström, awardee of the Emil Christian Hansen Gold Medal 2015

Nyström, Thomas, Petranovic, Dina

Journal:

FEMS Yeast Research

Year:

2015

Language:

english

File:

PDF, 130 KB

english, 2015

41

Role of frameshift ubiquitin B protein in Alzheimer's disease

Chen, Xin, Petranovic, Dina

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2016

Language:

english

File:

PDF, 1004 KB

english, 2016

42

The impact of respiration and oxidative stress response on recombinant α-amylase production by Saccharomyces cerevisiae

Martínez, José L., Meza, Eugenio, Petranovic, Dina, Nielsen, Jens

Journal:

Metabolic Engineering Communications

Year:

2016

Language:

english

File:

PDF, 455 KB

english, 2016

43

Moderate expression of SEC16 increases protein secretion by Saccharomyces cerevisiae

Bao, Jichen, Huang, Mingtao, Petranovic, Dina, Nielsen, Jens

Journal:

Applied and Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 1.67 MB

english, 2017

44

Probing functional roles of Wilson disease protein (ATP7B) copper-binding domains in yeast

Ponnandai Shanmugavel, Kumaravel, Petranovic, Dina, Wittung-Stafshede, Pernilla

Journal:

Year:

2017

Language:

english

File:

PDF, 1.92 MB

english, 2017

45

Cover Image, Volume 8, Issue 4

Chen, Xin, Petranovic, Dina

Journal:

Wiley Interdisciplinary Reviews: Systems Biology and Medicine

Year:

2016

File:

PDF, 4.26 MB

2016

46

Efficient protein production by yeast requires global tuning of metabolism

Huang, Mingtao, Bao, Jichen, Hallström, Björn M., Petranovic, Dina, Nielsen, Jens

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

47

Balanced trafficking between the ER and the Golgi apparatus increases protein secretion in yeast

Bao, Jichen, Huang, Mingtao, Petranovic, Dina, Nielsen, Jens

Journal:

Year:

2018

Language:

english

File:

PDF, 1.39 MB

english, 2018

48

Interplay of Energetics and ER Stress Exacerbates Alzheimer's Amyloid-β (Aβ) Toxicity in Yeast

Chen, Xin, Bisschops, Markus M. M., Agarwal, Nisha R., Ji, Boyang, Shanmugavel, Kumaravel P., Petranovic, Dina

Journal:

Frontiers in Molecular Neuroscience

Year:

2017

Language:

english

File:

PDF, 2.17 MB

english, 2017

49

Different Expression Levels of Human Mutant Ubiquitin B+1 (UBB+1) Can Modify Chronological Lifespan or Stress Resistance of Saccharomyces cerevisiae

Muñoz-Arellano, Ana Joyce, Chen, Xin, Molt, Andrea, Meza, Eugenio, Petranovic, Dina

Journal:

Frontiers in Molecular Neuroscience

Year:

2018

Language:

english

File:

PDF, 2.19 MB

english, 2018

50

Efficient yeast surface-display of novel complex synthetic cellulosomes

Tang, Hongting, Wang, Jiajing, Wang, Shenghuan, Shen, Yu, Petranovic, Dina, Hou, Jin, Bao, Xiaoming

Journal:

Microbial Cell Factories

Year:

2018

Language:

english

File:

PDF, 5.36 MB

english, 2018

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